| addPsmEvalVectorDouble(const QString &eval_name, const QString &eval_value_key, std::vector< double >::iterator begin, std::vector< double >::const_iterator end) | pappso::cbor::psm::CborScanMapBase | |
| CborScanMapBase(const PsmFileScanProcess &psm_file_scan_process) | pappso::cbor::psm::CborScanMapBase | |
| filterAndSortPsmList() override | pappso::cbor::psm::PsmSpecPeptidOmsScan | virtual |
| filterPsmListUniqueUniqueProforma() | pappso::cbor::psm::CborScanMapBase | |
| fixPositionStart(bool is_reverse, QCborMap &new_cbor_psm, std::size_t offset_position) const | pappso::cbor::psm::PsmSpecPeptidOmsScan | protected |
| getCborPsmList() const | pappso::cbor::psm::CborScanMapBase | |
| getCborScanId() const | pappso::cbor::psm::CborScanMapBase | |
| getCborScanPrecursor() const | pappso::cbor::psm::CborScanMapBase | |
| getCurrentQualifiedMassSpectrumSPtr() const | pappso::cbor::psm::CborScanMapBase | protected |
| m_decoyPrefix | pappso::cbor::psm::PsmSpecPeptidOmsScan | private |
| m_PsmFileScanProcess | pappso::cbor::psm::CborScanMapBase | protected |
| mp_psmSpecPeptidOms | pappso::cbor::psm::PsmSpecPeptidOmsScan | private |
| populateProteinMapUsingOldProteinMap(const PsmProteinMap &old_protein_map, PsmProteinMap &new_protein_map) const | pappso::cbor::psm::CborScanMapBase | |
| process() override | pappso::cbor::psm::PsmSpecPeptidOmsScan | protectedvirtual |
| PsmSpecPeptidOmsScan(const PsmSpecPeptidOms &psm_specpeptidoms, pappso::PrecisionPtr fragment_tolerance) | pappso::cbor::psm::PsmSpecPeptidOmsScan | |
| sequenceAlignment(bool is_reverse, const QCborMap &old_cbor_psm_map, QCborArray &new_psm_arr, pappso::specpeptidoms::SpOMSSpectrumCsp &experimental_spectrum, pappso::specpeptidoms::SemiGlobalAlignment &semi_global_alignment, const pappso::specpeptidoms::SpOMSProtein *protein_ptr) | pappso::cbor::psm::PsmSpecPeptidOmsScan | protected |
| storeAlignment(bool is_reverse, const QCborMap &old_cbor_psm, QCborMap &new_cbor_psm, const QString &accession, const pappso::specpeptidoms::Alignment &alignment) | pappso::cbor::psm::PsmSpecPeptidOmsScan | protected |
| ~CborScanMapBase() | pappso::cbor::psm::CborScanMapBase | virtual |
| ~PsmSpecPeptidOmsScan() | pappso::cbor::psm::PsmSpecPeptidOmsScan | virtual |