pappso::cbor::psm::PsmIonSeries Member List

This is the complete list of members for pappso::cbor::psm::PsmIonSeries, including all inherited members.

CborScanMapBase	pappso::cbor::psm::PsmFileScanProcess	private
CborStreamReaderInterface()	pappso::cbor::CborStreamReaderInterface
clearScanBuffer()	pappso::cbor::psm::PsmFileScanProcess	protected
close() override	pappso::cbor::psm::PsmFileScanProcessAndCopy	virtual
currentProteinRefListContainsDecoy() const	pappso::cbor::psm::PsmFileReaderBase	protected
currentProteinRefListContainsTarget() const	pappso::cbor::psm::PsmFileReaderBase	protected
delayProteinMapInMemory()	pappso::cbor::psm::PsmFileScanProcessAndCopy	protected
fastaFilesReady(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmFileScanProcessAndCopy	protectedvirtual
filterMassSpectrum(pappso::MassSpectrum &mass_spectrum) const	pappso::cbor::psm::PsmIonSeries
getCurrentPsmPeptideSp() const	pappso::cbor::psm::PsmFileReaderBase	protected
getCurrentQualifiedMassSpectrumSPtr() const	pappso::cbor::psm::PsmFileReaderBase	protected
getExpectedString()	pappso::cbor::CborStreamReaderInterface	protected
getPrecursorMass(double mz_prec, uint charge) const	pappso::cbor::psm::PsmFileReaderBase	protected
informationsReady(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmFileScanProcessAndCopy	protectedvirtual
initCborReader(QFile *pcborfile)	pappso::cbor::CborStreamReaderInterface	protected
initCborReader(QIODevice *pcborfile)	pappso::cbor::CborStreamReaderInterface	protected
logReady(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmFileScanProcessAndCopy	protectedvirtual
m_bufferScanSize	pappso::cbor::psm::PsmFileScanProcess	protected
m_cborInformations	pappso::cbor::psm::PsmFileReaderBase	protected
m_cborLog	pappso::cbor::psm::PsmFileReaderBase	protected
m_cborParameterMap	pappso::cbor::psm::PsmFileReaderBase	protected
m_cborScanId	pappso::cbor::psm::PsmFileReaderBase	protected
m_cborScanList	pappso::cbor::psm::PsmFileScanProcess	protected
m_cborScanMs2	pappso::cbor::psm::PsmFileReaderBase	protected
m_cborScanPrecursor	pappso::cbor::psm::PsmFileReaderBase	protected
m_cborScanProps	pappso::cbor::psm::PsmFileReaderBase	protected
m_cborScanPsmEval	pappso::cbor::psm::PsmFileReaderBase	protected
m_cborScanPsmProps	pappso::cbor::psm::PsmFileReaderBase	protected
m_currentIdentificationFileList	pappso::cbor::psm::PsmFileReaderBase	protected
m_currentPeaklistFile	pappso::cbor::psm::PsmFileReaderBase	protected
m_currentPsmProforma	pappso::cbor::psm::PsmFileReaderBase	protected
m_currentPsmProteinRefList	pappso::cbor::psm::PsmFileReaderBase	protected
m_currentSampleName	pappso::cbor::psm::PsmFileReaderBase	protected
m_data	pappso::cbor::CborStreamReaderInterface	protected
m_decoyFastaFiles	pappso::cbor::psm::PsmFileReaderBase	protected
m_expectedString	pappso::cbor::CborStreamReaderInterface	protected
m_fragmentTolerance	pappso::cbor::psm::PsmIonSeries	protected
m_operation	pappso::cbor::psm::PsmFileScanProcessAndCopy	protected
m_proteinMap	pappso::cbor::psm::PsmFileReaderBase	protected
m_psmIonSeriesParameters	pappso::cbor::psm::PsmIonSeries	protected
m_psmNewProteinMap	pappso::cbor::psm::PsmFileScanProcessAndCopy	protected
m_targetFastaFiles	pappso::cbor::psm::PsmFileReaderBase	protected
mp_cborOutput	pappso::cbor::psm::PsmFileScanProcessAndCopy	protected
mp_copyCborOutput	pappso::cbor::psm::PsmFileScanProcessAndCopy	protected
mpa_bufferAfterProteinMap	pappso::cbor::psm::PsmFileScanProcessAndCopy	protected
mpa_bufferWriterAfterProteinMap	pappso::cbor::psm::PsmFileScanProcessAndCopy	protected
mpa_cborReader	pappso::cbor::CborStreamReaderInterface	protected
newCborScanMap() override	pappso::cbor::psm::PsmIonSeries	protectedvirtual
parameterMapReady(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmIonSeries	protectedvirtual
processBufferScan(pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileScanProcess	protectedvirtual
processBufferScanDone(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmFileScanProcessAndCopy	protectedvirtual
proteinMapReady(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmFileScanProcessAndCopy	protectedvirtual
PsmFileReaderBase()	pappso::cbor::psm::PsmFileReaderBase
PsmFileScanProcess(std::size_t buffer_scan_size)	pappso::cbor::psm::PsmFileScanProcess
PsmFileScanProcessAndCopy(std::size_t buffer_scan_size, CborStreamWriter *cbor_output_p, const QString &operation)	pappso::cbor::psm::PsmFileScanProcessAndCopy
PsmIonSeries(std::size_t buffer_scan_size, CborStreamWriter *cbor_output_p, const QJsonObject &parameters)	pappso::cbor::psm::PsmIonSeries
psmReady(pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileReaderBase	protectedvirtual
readCbor(QFile *cborp, pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileReaderBase
readCbor(QIODevice *cborp, pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileReaderBase
readInformations(pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileReaderBase	protectedvirtual
readLog(pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileReaderBase	protectedvirtual
readParameterMap(pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileReaderBase	protectedvirtual
readProteinMap(pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileReaderBase	protectedvirtual
readPsm(pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileReaderBase	protectedvirtual
readPsmFile(bool &is_ok)	pappso::cbor::psm::PsmFileReaderBase	protected
readPsmProteinRef(bool &is_ok)	pappso::cbor::psm::PsmFileReaderBase	protected
readRoot(pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileReaderBase	protected
readSample(pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileReaderBase	protectedvirtual
readScan(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmFileScanProcess	protectedvirtual
sampleFinished(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmFileScanProcessAndCopy	protectedvirtual
sampleListFinished(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmFileScanProcessAndCopy	protectedvirtual
sampleListStarted(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmFileScanProcessAndCopy	protectedvirtual
sampleStarted(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmFileScanProcessAndCopy	protectedvirtual
scanFinished(pappso::UiMonitorInterface &monitor) override	pappso::cbor::psm::PsmFileScanProcess	protectedvirtual
scanStarted(pappso::UiMonitorInterface &monitor)	pappso::cbor::psm::PsmFileReaderBase	protectedvirtual
writePsmFile(CborStreamWriter &writer, const PsmFile &psm_file)	pappso::cbor::psm::PsmFileReaderBase	protected
writePsmFileList(CborStreamWriter &writer, const std::vector< PsmFile > &file_list)	pappso::cbor::psm::PsmFileReaderBase	protected
~CborStreamReaderInterface()	pappso::cbor::CborStreamReaderInterface	virtual
~PsmFileReaderBase() override	pappso::cbor::psm::PsmFileReaderBase	virtual
~PsmFileScanProcess()	pappso::cbor::psm::PsmFileScanProcess	virtual
~PsmFileScanProcessAndCopy()	pappso::cbor::psm::PsmFileScanProcessAndCopy	virtual
~PsmIonSeries()	pappso::cbor::psm::PsmIonSeries	virtual