pappso::OboListModel Class Reference

#include <obolistmodel.h>

Inheritance diagram for pappso::OboListModel:

Classes
class	OboPsiModHandler

Public Member Functions
	OboListModel (QObject *parent=nullptr)
	~OboListModel ()
void	loadPsiMod ()
QVariant	data (const QModelIndex &index, int role=Qt::DisplayRole) const override
int	rowCount (const QModelIndex &parent=QModelIndex()) const override
const OboPsiModTerm &	getOboPsiModTerm (int row) const

Protected Attributes
std::vector< OboPsiModTerm >	m_oboPsiModTermList

Detailed Description

Todo

write docs

Definition at line 45 of file obolistmodel.h.

Constructor & Destructor Documentation

OboListModel()

OboListModel::OboListModel

(

QObject *

parent = nullptr

)

Default constructor

Definition at line 42 of file obolistmodel.cpp.

                                          : QStringListModel(parent)
{
}

~OboListModel()

OboListModel::~OboListModel

(

)

Destructor

Definition at line 46 of file obolistmodel.cpp.

{
}

Member Function Documentation

data()

QVariant pappso::OboListModel::data ( const QModelIndex & index, int role = Qt::DisplayRole ) const

override

Definition at line 89 of file obolistmodel.cpp.

{
 
  // generate a log message when this method gets called
  std::size_t row = index.row();
  // int col = index.column();
  // qDebug() << QString("row %1, col%2, role %3")
  //         .arg(row).arg(col).arg(role);
  if(row < m_oboPsiModTermList.size())
    {
 
      switch(role)
        {
          case Qt::CheckStateRole:
 
            break;
          case Qt::BackgroundRole:
            // return QVariant(QColor("grey"));
            break;
          case Qt::SizeHintRole:
            // qDebug() << "ProteinTableModel::headerData " <<
            // ProteinTableModel::getColumnWidth(section);
            // return QSize(PeptideTableModel::getColumnWidth(col), 30);
            break;
          case Qt::ToolTipRole:
            break;
          case Qt::DisplayRole:
            return QVariant(QString("%1  %2 %3")
                              .arg(m_oboPsiModTermList[row].getAccession())
                              .arg(m_oboPsiModTermList[row].m_diffMono)
                              .arg(m_oboPsiModTermList[row].m_name));
            break;
          case Qt::UserRole:
            QVariant value;
            value.setValue(m_oboPsiModTermList[row]);
            return value;
            break;
        }
    }
  return QVariant();
}

References m_oboPsiModTermList.

Referenced by pappso::OboListProxyModel::lessThan().

getOboPsiModTerm()

const pappso::OboPsiModTerm & pappso::OboListModel::getOboPsiModTerm

(

int

row

)

const

Definition at line 138 of file obolistmodel.cpp.

{
  if(row < (int)m_oboPsiModTermList.size())
    {
      return m_oboPsiModTermList[row];
    }
  else
    {
      throw pappso::ExceptionNotFound(tr("OBO term not found"));
    }
}

References m_oboPsiModTermList.

loadPsiMod()

void OboListModel::loadPsiMod

(

)

Definition at line 67 of file obolistmodel.cpp.

{
  OboPsiModHandler handler(this);
  OboPsiMod reader(handler);
  OboUnimod unimod_reader(handler);
 
 
  // https://pubchem.ncbi.nlm.nih.gov/compound/640368
  OboPsiModTerm term;
  term.setAccession("USER:2-Ethynylbenzaldehyde");
  term.m_diffFormula = "H 4 C 9 O 0"; // C9H6O
  term.m_name        = "2-Ethynylbenzaldehyde";
  ChemicalFormula formula;
  formula.setOboPsiModTerm(term);
  term.m_diffMono = formula.getMass();
 
  m_oboPsiModTermList.push_back(term);
 
  qDebug() << m_oboPsiModTermList.size();
}

References pappso::ChemicalFormula::getMass(), pappso::OboPsiModTerm::m_diffFormula, pappso::OboPsiModTerm::m_diffMono, pappso::OboPsiModTerm::m_name, m_oboPsiModTermList, pappso::OboPsiModTerm::setAccession(), and pappso::ChemicalFormula::setOboPsiModTerm().

rowCount()

int pappso::OboListModel::rowCount ( const QModelIndex & parent = QModelIndex() ) const

override

Definition at line 132 of file obolistmodel.cpp.

{
  return (int)m_oboPsiModTermList.size();
}

References m_oboPsiModTermList.

Member Data Documentation

m_oboPsiModTermList

std::vector<OboPsiModTerm> pappso::OboListModel::m_oboPsiModTermList

protected

Definition at line 83 of file obolistmodel.h.

Referenced by data(), getOboPsiModTerm(), loadPsiMod(), and rowCount().

---

The documentation for this class was generated from the following files:

• pappsomspp/gui/obo/obolistwidget/obolistmodel.h
• pappsomspp/gui/obo/obolistwidget/obolistmodel.cpp