Here is a list of all class members with links to the classes they belong to:

- n -

n_bins : vg::Packer
n_iterations : vg::MCMCGenotyper
naive_graph : GraphHandler
name : vg::BenchmarkResult, vg::Funnel::Stage, vg::GAFSorterFile, vg::Recombinator::LocalHaplotype, vg::subcommand::Subcommand, vg::Transcript, vg::VG, vg::VG::Plan
name_prefixes : vg::ReadFilter< Read >
name_to_id : vg::algorithms::GFAIDMapInfo, vg::Paths
nearest_ref_pos() : vg::Surjector
need_comma : vg::ProblemDumpExplainer
need_line : vg::TSVExplainer
need_tab : vg::TSVExplainer
NegationFlagArgSpec() : vg::subcommand::NegationFlagArgSpec< Receiver >
nested : vg::FlowCaller
nested_snarl_offset : vg::ZipCodeForest::seed_info_t
nested_support_finder : vg::NestedFlowCaller
NestedCachedPackedTraversalSupportFinder() : vg::NestedCachedPackedTraversalSupportFinder
NestedFlowCaller() : vg::NestedFlowCaller
nesting_info_headers() : vg::VCFOutputCaller
net_graph_of() : vg::SnarlManager
net_handle : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem::SnarlTreeChild
net_handle_to_node_problem_index : vg::SnarlDistanceIndexClusterer::ClusteringProblem
NetGraph() : vg::NetGraph
new_height() : haplo::hDP_gbwt_graph_accessor< GBWTType >
new_length() : haplo::hDP_gbwt_graph_accessor< GBWTType >
new_node : haplo::hDP_gbwt_graph_accessor< GBWTType >
new_side() : haplo::hDP_gbwt_graph_accessor< GBWTType >
next() : vg::connection_t, vg::PathBranch, vg::PhasedGenome::HaplotypeNode, vg::subpath_t, vg::WFATree, vg::WindowedVcfBuffer
next_char : vg::kmer_t
next_chars : vg::KmerPosition
next_context_explanation_number : vg::Explainer
next_cost : vg::AlignmentChainModelVertex, vg::MEMChainModelVertex
next_empty_alignment() : vg::BandedGlobalAligner< IntType >::AltTracebackStack
next_explanation_number : vg::Explainer
next_is_empty() : vg::BandedGlobalAligner< IntType >::AltTracebackStack
next_pos : vg::kmer_t
next_pos_chars() : vg::Sampler
next_positions : vg::KmerPosition
next_score() : vg::WFATree
next_size() : vg::subpath_t
next_snarl() : vg::SnarlManager
next_traceback_alignment() : vg::BandedGlobalAligner< IntType >::AltTracebackStack
NGSSimulator() : vg::NGSSimulator
no_chain_info() : vg::MinimizerMapper
no_clustering : vg::MultipathMapper
NO_CODE : vg::MIPayload
NO_INDEX : vg::MinimizerMapper
no_Ns : vg::Sampler
no_pos() : vg::WFATree
NO_READ_INDEX : vg::MinimizerMapper
no_splice_log_odds : vg::MultipathMapper
no_splice_natural_log_odds : vg::MultipathMapper
NO_VALUE : vg::MIPayload
NODE : vg::ZipCode
Node : vg::Tree< T >
node : vg::BandedGlobalAligner< IntType >::BAMatrix, vg::CactusSide, vg::MatchPos, vg::NodeSide, vg::NodeTraversal
node_by_id : vg::VG
node_cache : vg::Sampler
NODE_CHAIN_COMPONENT_OFFSET : vg::ZipCode
node_count : vg::DagifiedGraph, vg::VG
node_count_next() : vg::VG
node_count_prev() : vg::VG
node_handle : vg::MIPayload
node_id() : vg::mapping_t, vg::position_t
node_id_to_idx : vg::BandedGlobalAligner< IntType >
node_ids : vg::ContractingGraph, vg::SparseUnionFind
node_index : vg::DozeuInterface::graph_pos_s, vg::Packer, vg::VG
node_is_invalid() : vg::ZipCodeTree
NODE_IS_REVERSED_OFFSET : vg::ZipCode
node_length : vg::MIPayload, vg::PathIndex, vg::Sampler, vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem, vg::SourceSinkOverlay, vg::ZipCodeForest::seed_info_t
NODE_LENGTH_OFFSET : vg::ZipCode
node_lengths : haplo::gbwt_thread_t
node_listeners : vg::algorithms::GFAParser
node_locations : vg::PhasedGenome
node_mapping : vg::Paths
node_mappings : vg::BandedGlobalAligner< IntType >::BABuilder
NODE_MISSING : vg::AlignmentValidity
node_occurrences : vg::PathIndex
node_offset : vg::MatchPos, vg::Viz, vg::WFAAlignment, vg::WFAPoint
NODE_OFFSET_OFFSET : vg::ZipCode
node_path_traversal_counts() : vg::Paths
node_path_traversals() : vg::Paths
node_qual_bin_size : vg::Packer
node_quality_bin_offset() : vg::Packer
node_quality_bin_size() : vg::Packer
node_quality_civ : vg::Packer
node_quality_dynamic : vg::Packer
node_quality_locks : vg::Packer
node_quality_vector_size() : vg::Packer
node_rank() : vg::VG
node_sequence : vg::WFANode
NODE_SIZE : vg::ZipCode
node_starts_in_path() : vg::VG
node_subset : vg::SubgraphOverlay
node_supports : vg::SupportAugmentedGraph
node_to_interval : vg::GrefCover
node_to_segment_and_offsets : vg::FlatFileBackTranslation
node_to_snarl() : vg::SnarlGraph
node_to_variant : vg::VCFTraversalFinder
NODE_TOO_SHORT : vg::AlignmentValidity
node_traversal : vg::PhasedGenome::HaplotypeNode
node_weight_callback : vg::FlowTraversalFinder
nodelength() : haplo::gbwt_thread_t
nodes : haplo::gbwt_thread_t, vg::algorithms::Graph, vg::DiagramExplainer, vg::FlowSort::Growth, vg::Graph, vg::MaximalExactMatch, vg::MEMClusterer::DPScoreComparator, vg::MEMClusterer::HitGraph, vg::PathPiece, vg::WFATree
nodes_before_offset() : vg::Viz
nodes_claimed_twice : vg::GrefCover::TopLevelSnarlStats
nodes_next() : vg::VG
nodes_prev() : vg::VG
NodeSide() : vg::NodeSide
NodeTraversal() : vg::NodeTraversal
non_intermediate_aliases() : vg::AliasGraph
nonce : vg::Sampler
nondisjoint() : haplo::int_itvl_t
None : vg::IndexingParameters
nonoverlapping_node_context_without_paths() : vg::VG
normal : vg::Haplotypes::Subchain
normal_aligners : vg::Genotyper
normal_distribution() : vg::normal_distribution< T >
nowhere() : vg::algorithms::TracedScore
nt_table : vg::DinucleotideMachine, vg::MatrixAlignmentScorer
nth_copy_of_handle() : vg::DagifiedGraph
Null : vg::multipath_alignment_t
NullClusterer() : vg::NullClusterer
NullMaskingGraph() : vg::NullMaskingGraph
num_alt_alns : vg::MultipathMapper
num_bases_dynamic : vg::Packer
num_bp_per_min : vg::MinimizerMapper
NUM_CANDIDATES : vg::Recombinator
num_edges_dynamic : vg::Packer
NUM_HAPLOTYPES : vg::Recombinator
num_haplotypes() : vg::PhasedGenome, vg::Recombinator::Parameters
NUM_INLINE : vg::MatchPos::PathList
num_items : vg::ShuffledPairs
num_jobs : vg::RebuildParameters
num_left_handles : vg::JoinedSpliceGraph
num_mapping_attempts : vg::MultipathMapper
num_nodes_dynamic : vg::Packer
num_null_nodes : vg::DozeuPinningOverlay, vg::NullMaskingGraph
num_pairs : vg::ShuffledPairs
num_paths : GBWTConfig
num_paths_set : GBWTConfig
num_ref_intervals : vg::GrefCover
num_snarls() : vg::SnarlManager
num_threads : vg::Transcriptome
number_of_values : vg::SummaryStatistics
numeric_mode : vg::algorithms::GFAIDMapInfo